[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 45 items for (author: dong & yy)

EMDB-16791:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-16792:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-16793:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, C16S, C20S, C870S, T1279C mutant
Method: single particle / : Nganga PN, Roderer D, Belyy A, Prumbaum D, Raunser S

EMDB-34929:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in a DNA binding form
Method: single particle / : Xu Y, Wu Y, Zhang Y, Fan R, Yang Y, Li D, Yang B, Zhang Z, Dong C, Zhang X, Tang X, Dong H

EMDB-34927:
Cryo-EM structure of monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex without DNA at 2.76 angostram
Method: single particle / : Xu Y, Wu Y, Zhang Y, Fan R, Yang Y, Li D, Yang B, Zhang Z, Dong C, Zhang X, Tang X, Dong H

EMDB-40976:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40977:
Cryo-EM structure of mink variant Y453F trimeric spike protein
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40978:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40979:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at upRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40980:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at downRBD conformation.
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-41143:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Liang B

PDB-8t20:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t21:
Cryo-EM structure of mink variant Y453F trimeric spike protein
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t22:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t23:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at upRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t25:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at downRBD conformation.
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8taz:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Liang B

EMDB-34259:
cryo-EM structure of Omicron BA.5 S protein in complex with XGv282
Method: single particle / : Xia XY, Zhang YY, Chi XM, Huang BD, Wu LS, Zhou Q

EMDB-34260:
Cryo-EM map of Omicron BA.5 S protein in complex with XGv282 focused on RBD_XGv282 sub-complex
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-34261:
cryo-EM structure of Omicron BA.5 S protein in complex with XGv289
Method: single particle / : Xia XY, Zhang YY, Chi XM, Huang BD, Wu LS, Zhou Q

EMDB-34262:
Cryo-EM map of Omicron BA.5 S protein in complex with XGv289 focused on RBD_XGv289 sub-complex
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-34263:
cryo-EM structure of Omicron BA.5 S protein in complex with S2L20
Method: single particle / : Xia XY, Zhang YY, Chi XM, Huang BD, Wu LS, Zhou Q

EMDB-34264:
Cryo-EM map of Omicron BA.5 S protein in complex with S2L20 focused on NTD_S2L20 sub-complex
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-33489:
Cryo-EM structure of human DICER-pre-miRNA in a dicing state
Method: single particle / : Lee H, Roh SH

EMDB-33490:
Cryo-EM structure of an apo-form of human DICER
Method: single particle / : Lee H, Roh SH

EMDB-30947:
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state
Method: single particle / : Guo YY, Zhang YY, Yan RH, Huang BD, Ye FF, Wu LS, Chi XM, Zhou Q

EMDB-30948:
Cryo EM structure of a K+-bound Na+,K+-ATPase in the E2 state
Method: single particle / : Guo YY, Zhang YY, Yan RH, Huang BD, Ye FF, Wu LS, Chi XM, Zhou Q

EMDB-30949:
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state with ATP-gamma-S
Method: single particle / : Guo YY, Zhang YY, Yan RH, Huang BD, Ye FF, Wu LS, Chi XM, Zhou Q

EMDB-32869:
S protein of Delta variant in complex with ZWD12
Method: single particle / : Guo YY, Zhang YY, Zhou Q

EMDB-32870:
S protein of Delta variant in complex with ZWD12 focused on RBD_ZWD12 sub-complex
Method: single particle / : Guo YY, Zhang YY

EMDB-32871:
S protein of Delta variant in complex with ZWC6
Method: single particle / : Guo YY, Zhang YY, Zhou Q

EMDB-32872:
S protein of Delta variant in complex with ZWC6 focused on RBD_ZWC6 sub-complex
Method: single particle / : Guo YY, Zhang YY

EMDB-12566:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with HIP-B
Method: single particle / : Baronina A, Pike ACW, Yu X, Dong YY, Shintre CA, Tessitore A, Chu A, Rotty B, Venkaya S, Mukhopadhyay SMM, Borkowska O, Chalk R, Shrestha L, Burgess-Brown NA, Edwards AM, Arrowsmith CH, Bountra C, Han S, Carpenter EP, Structural Genomics Consortium (SGC)

EMDB-32920:
S protein of SARS-CoV-2 in complex with 2G1
Method: single particle / : Guo YY, Zhang YY

EMDB-32921:
S protein of SARS-CoV-2 in complex with 2G1 focused on RBD_2G1 sub-complex
Method: single particle / : Guo YY, Zhang YY

EMDB-30650:
Cryo-EM structure of the Ams1 and Nbr1 complex
Method: single particle / : Zhang J, Ye K

EMDB-30652:
Cryo-EM structure of the Ape4 and Nbr1 complex
Method: single particle / : Zhang J, Ye K

EMDB-30622:
Cryo-EM structure of amyloid fibril formed by human RIPK3
Method: helical / : Zhao K, Ma YY

EMDB-10094:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with TFB-TBOA
Method: single particle / : Baronina A, Pike ACW, Yu X, Dong YY, Shintre CA, Tessitore A, Chu A, Rotty B, Venkaya S, Mukhopadhyay S, Borkowska O, Chalk R, Shrestha L, Burgess-Brown NA, Edwards AM, Arrowsmith CH, Bountra C, Han S, Carpenter EP, Structural Genomics Consortium (SGC)

EMDB-30276:
cryo EM map of the S protein of SARS-CoV-2 in complex bound with 4A8
Method: single particle / : Yan RH, Zhang YY, Guo YY, Li YN, Xia L, Zhou Q

EMDB-30277:
Cryo EM map of the interface between NTD of SARS-CoV-2 and 4A8
Method: single particle / : Yan RH, Zhang YY, Guo YY, Li YN, Xia L, Zhou Q

EMDB-9187:
Cryo-EM structure of the human neutral amino acid transporter ASCT2
Method: single particle / : Yu X, Han S

EMDB-9188:
Cryo-EM structure of the human neutral amino acid transporter ASCT2
Method: single particle / : Yu X, Han S

EMDB-5289:
The cryo-EM map of DegQ 24-mer
Method: single particle / : Bai XC, Wang XJ, Ye YY, Pan XJ, Chang LF, Leng D, Sui SF

EMDB-5290:
The cryo-EM map of DegQ 12-mer
Method: single particle / : Bai XC, Wang XJ, Ye YY, Pan XJ, Chang LF, Leng D, Sui SF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more